October 2014 Archives by thread

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Starting: Wed Oct 1 12:08:03 BST 2014
Ending: Fri Oct 31 18:37:05 GMT 2014
Messages: 118

• [ensembl-dev] VEP: building cache with custom transcript on reverse strand, bug?   Nicolas Thierry-Mieg
  • [ensembl-dev] VEP: building cache with custom transcript on reverse strand, bug?   Will McLaren
    • [ensembl-dev] VEP: building cache with custom transcript on reverse strand, bug?   Nicolas Thierry-Mieg
      • [ensembl-dev] VEP: building cache with custom transcript on reverse strand, bug?   Will McLaren
      • [ensembl-dev] VEP: building cache with custom transcript on reverse strand, bug?   Nicolas Thierry-Mieg
• [ensembl-dev] Condel plugin update   Will McLaren
• [ensembl-dev] Uninitialized variable in reverse in Sequence.pm   Giulietta
• [ensembl-dev] Ensembl release 77 is out!   Thomas Maurel
• [ensembl-dev] Linkage disequilibrium clustering   Genomeo Dev
  • [ensembl-dev] Linkage disequilibrium clustering   Mike Pierce
    • [ensembl-dev] Linkage disequilibrium clustering   Will McLaren
      • [ensembl-dev] Linkage disequilibrium clustering   Genomeo Dev
      • [ensembl-dev] Linkage disequilibrium clustering   Will McLaren
• [ensembl-dev] Get chromosome gene summaries automatically   Fengyuan Hu
  • [ensembl-dev] Get chromosome gene summaries automatically   mag
• [ensembl-dev] VEP plugin errors on Ensembl 76+   Guillermo Marco Puche
  • [ensembl-dev] VEP plugin errors on Ensembl 76+   Will McLaren
    • [ensembl-dev] VEP plugin errors on Ensembl 76+   Guillermo Marco Puche
• [ensembl-dev] retrieving sequence data from previous assemblies using fetch_by_region method   Duarte Molha
  • [ensembl-dev] retrieving sequence data from previous assemblies using fetch_by_region method   Andy Yates
    • [ensembl-dev] retrieving sequence data from previous assemblies using fetch_by_region method   Duarte Molha
      • [ensembl-dev] retrieving sequence data from previous assemblies using fetch_by_region method   Andy Yates
• [ensembl-dev] mysqldump for Macaca Fascicularis pre-data?   Jan Vogel
  • [ensembl-dev] mysqldump for Macaca Fascicularis pre-data?   Anne Lyle
    • [ensembl-dev] mysqldump for Macaca Fascicularis pre-data?   Jan Vogel
• [ensembl-dev] Ensembl versions and genome builds   Michael Yourshaw
  • [ensembl-dev] Ensembl versions and genome builds   mag
• [ensembl-dev] Question: why can't I find GERP score in emf file?   Tang, Haiming
  • [ensembl-dev] Question: why can't I find GERP score in emf file?   Stephen Fitzgerald
    • [ensembl-dev] Question: why can't I find GERP score in emf file?   Tang, Haiming
• [ensembl-dev] question variation APi   Nathalie Conte
  • [ensembl-dev] question variation APi   Will McLaren
    • [ensembl-dev] question variation APi   Nathalie Conte
      • [ensembl-dev] question variation APi   Nathalie Conte
      • [ensembl-dev] question variation APi   Will McLaren
      • [ensembl-dev] question variation APi   Nathalie Conte
      • [ensembl-dev] question variation APi   Will McLaren
      • [ensembl-dev] question variation APi   Nathalie Conte
      • [ensembl-dev] question variation APi   Nathalie Conte
• [ensembl-dev] Free Webinar: Ensembl new release, e77   Denise Carvalho-Silva
• [ensembl-dev] REST server gives a bad request using POST method   Paolo Cozzi
  • [ensembl-dev] REST server gives a bad request using POST method   mag
  • [ensembl-dev] REST server gives a bad request using POST method   mag
    • [ensembl-dev] REST server gives a bad request using POST method   ITB
  • [ensembl-dev] REST server gives a bad request using POST method   Cristofer Granillo
• [ensembl-dev] How to add custom motifs and transcription factor binding sites to VEP   Matt Wood
  • [ensembl-dev] How to add custom motifs and transcription factor binding sites to VEP   Will McLaren
    • [ensembl-dev] How to add custom motifs and transcription factor binding sites to VEP   njohnson
• [ensembl-dev] XSS Vulnerability in web frontend   Ben Warren
  • [ensembl-dev] XSS Vulnerability in web frontend   Anne Lyle
• [ensembl-dev] list of SNPs with a phenotype, sql help   Nathalie Conte
  • [ensembl-dev] list of SNPs with a phenotype, sql help   Laurent Gil
  • [ensembl-dev] list of SNPs with a phenotype, sql help   Nathalie Conte
    • [ensembl-dev] list of SNPs with a phenotype, sql help   Laurent Gil
• [ensembl-dev] a problem when viewing the tophat results 'accepted hits'   weiqi.wang
  • [ensembl-dev] a problem when viewing the tophat results 'accepted hits'   Emily Perry
• [ensembl-dev] silent VEP failures   Allison Regier
  • [ensembl-dev] silent VEP failures   Will McLaren
    • [ensembl-dev] silent VEP failures   Will McLaren
• [ensembl-dev] REST server replies with "assembly_name":"GRCh38" with other species than human   Paolo Cozzi
  • [ensembl-dev] REST server replies with "assembly_name":"GRCh38" with other species than human   Kieron Taylor
    • [ensembl-dev] REST server replies with "assembly_name":"GRCh38" with other species than human   Paolo Cozzi
      • [ensembl-dev] REST server replies with "assembly_name":"GRCh38" with other species than human   mag
      • [ensembl-dev] REST server replies with "assembly_name":"GRCh38" with other species than human   Paolo Cozzi
      • [ensembl-dev] REST server replies with "assembly_name":"GRCh38" with other species than human   mag
      • [ensembl-dev] REST server replies with "assembly_name":"GRCh38" with other species than human   Paolo Cozzi
• [ensembl-dev] variation API-Data truncated for column error   Nathalie Conte
  • [ensembl-dev] variation API-Data truncated for column error   Laurent Gil
• [ensembl-dev] Sorted chromosomes in genome FASTA + chr prefix in GRCh38 + dbSNP updates   Joel Fillon, Mr
  • [ensembl-dev] Sorted chromosomes in genome FASTA + chr prefix in GRCh38 + dbSNP updates   Fiona Cunningham
    • [ensembl-dev] Sorted chromosomes in genome FASTA + chr prefix in GRCh38 + dbSNP updates   Joel Fillon, Mr
  • [ensembl-dev] Sorted chromosomes in genome FASTA + chr prefix in GRCh38 + dbSNP updates   Andy Yates
    • [ensembl-dev] Sorted chromosomes in genome FASTA + chr prefix in GRCh38 + dbSNP updates   Joel Fillon, Mr
• [ensembl-dev] Ensembl Release Webinar: it's free and it's tomorrow   Denise Carvalho-Silva
• [ensembl-dev] Declarations of intentions for Ensembl Release 78   Amonida Zadissa
• [ensembl-dev] perl API: how to avoid deprecated identifiers?   Michael Yourshaw
  • [ensembl-dev] perl API: how to avoid deprecated identifiers?   jv tra
• [ensembl-dev] VEP offline script: Checking/creating FASTA index fails to find existing index   Cyriac Kandoth
  • [ensembl-dev] VEP offline script: Checking/creating FASTA index fails to find existing index   Will McLaren
    • [ensembl-dev] VEP offline script: Checking/creating FASTA index fails to find existing index   mag
      • [ensembl-dev] VEP offline script: Checking/creating FASTA index fails to find existing index   Cyriac Kandoth
• [ensembl-dev] Orthology information   Ogan Mancarci
  • [ensembl-dev] Orthology information   Cristofer Granillo
  • [ensembl-dev] Orthology information   Matthieu Muffato
• [ensembl-dev] runtime error?   Nathalie Conte
  • [ensembl-dev] runtime error?   Nathalie Conte
    • [ensembl-dev] runtime error?   Andy Yates
• [ensembl-dev] Bio::EnsEMBL::Feature::strand doesn't match output strand in plugin   Matt Wood
  • [ensembl-dev] Bio::EnsEMBL::Feature::strand doesn't match output strand in plugin   Will McLaren
    • [ensembl-dev] Bio::EnsEMBL::Feature::strand doesn't match output strand in plugin   Matt Wood
• [ensembl-dev] Phase 3 data from 1000 genomes   Genomeo Dev
  • [ensembl-dev] Phase 3 data from 1000 genomes   Will McLaren
• [ensembl-dev] grch37.ensembl.org down   Genomeo Dev
  • [ensembl-dev] grch37.ensembl.org down   Anne Lyle
  • [ensembl-dev] grch37.ensembl.org down   Anne Lyle
• [ensembl-dev] Exons numbers in VEP   Eva Goncalves Serra
  • [ensembl-dev] Exons numbers in VEP   Will McLaren
    • [ensembl-dev] Exons numbers in VEP   Eva Goncalves Serra
  • [ensembl-dev] Exons numbers in VEP   LAW Andy
    • [ensembl-dev] Exons numbers in VEP   Eva Goncalves Serra
    • [ensembl-dev] Exons numbers in VEP   Healy, Matthew
      • [ensembl-dev] Exons numbers in VEP   Eva Goncalves Serra
      • [ensembl-dev] Exons numbers in VEP   Healy, Matthew
• [ensembl-dev] VEP installing cache to other directory   Eva Goncalves Serra
  • [ensembl-dev] VEP installing cache to other directory   Will McLaren
• [ensembl-dev] Ensembl ID History converter tool not working   Greg Slodkowicz
  • [ensembl-dev] Ensembl ID History converter tool not working   Anne Lyle
  • [ensembl-dev] Ensembl ID History converter tool not working   Anne Lyle
    • [ensembl-dev] Ensembl ID History converter tool not working   Greg Slodkowicz
• [ensembl-dev] ID status type: Ensembl protists   swaraj basu
• [ensembl-dev] Synonymous HGVSp   Konrad Karczewski
  • [ensembl-dev] Synonymous HGVSp   Will McLaren
    • [ensembl-dev] Synonymous HGVSp   Konrad Karczewski
• [ensembl-dev] Complex variant issue   Konrad Karczewski
  • [ensembl-dev] Complex variant issue   Will McLaren
    • [ensembl-dev] Complex variant issue   Konrad Karczewski
• [ensembl-dev] difference between refseq_import and refseq_human_import   Kiran Mukhyala
  • [ensembl-dev] difference between refseq_import and refseq_human_import   Daniel Barrell

Last message date: Fri Oct 31 18:37:05 GMT 2014
Archived on: Tue Nov 2 21:56:21 GMT 2021

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