[ensembl-dev] REST server replies with "assembly_name":"GRCh38" with other species than human

[mag]

Hi Paolo,

Thanks for reporting this, it is nice to see the service is being used 
and not just for human.

The error has now been fixed, the two examples below should work fine.


Regards,
Magali

On 14/10/2014 15:30, Paolo Cozzi wrote:
>
> Thank you all for your support, I'll check my scripts and I will 
> control assembly detail.
>
> I have another bug to report: searching in VEP endpoint for sheep and 
> horse, I got {"error":"something bad has happened"}. Here the curl lines:
>
> $ curl -H "content-type:application/json" -H "accept:application/json" 
> --data '{ "variants" : ["21 26960070 rs116645811 G A . . .", "21 
> 26965148 rs1135638 G A . . ." ] }' 
> http://rest.ensembl.org/vep/sheep/region
>
> $ curl -H "content-type:application/json" -H "accept:application/json" 
> --data '{ "variants" : ["21 26960070 rs116645811 G A . . .", "21 
> 26965148 rs1135638 G A . . ." ] }' 
> http://rest.ensembl.org/vep/horse/region
>
> Thank you for your sopport,
>
> regards,
>
> Paolo
>
>
>
> Il 14/10/2014 12:52, mag ha scritto:
>> Hi Paolo,
>>
>> Thanks again for reporting this.
>>
>> The issue has been fixed and pushed onto our live server.
>> Please do not hesitate to report any further issues.
>>
>>
>> Regards,
>> Magali
>>
>> On 13/10/2014 15:11, Paolo Cozzi wrote:
>>>
>>> Dear Kieron,
>>>
>>> thank you for your suggestion. I will temporarily fix my script in 
>>> order to retrive the correct assembly via info endpoint. I will wait 
>>> for VEP endpoint bugfix
>>>
>>> Regards,
>>>
>>> Paolo
>>>
>>>
>>>
>>> Il 13/10/2014 15:42, Kieron Taylor ha scritto:
>>>> Hi Paolo,
>>>>
>>>> Thanks for your bug report. This is clearly an error. While the VEP 
>>>> endpoint output may be reporting the wrong assembly, you can still 
>>>> turn to info/assembly to get the correct response while we figure 
>>>> out where the bug has come from.
>>>>
>>>> http://rest.ensembl.org/info/assembly/cow
>>>>
>>>> Regards,
>>>>
>>>> Kieron Taylor
>>>> Ensembl Core
>>>>
>>>>
>>>> On 13/10/2014 14:28, Paolo Cozzi wrote:
>>>>>
>>>>> Dear all,
>>>>>
>>>>> Using REST server with other species than human, I found always
>>>>> "assembly_name":"GRCh38", for example:
>>>>>
>>>>> $ curl -H "content-type:application/json" -H 
>>>>> "accept:application/json"
>>>>> --data '{ "variants" : ["21 26960070 rs116645811 G A . . .", "21
>>>>> 26965148 rs1135638 G A . . ." ] }' 
>>>>> http://rest.ensembl.org/vep/cow/region
>>>>>
>>>>> [{"input":"21 26960070 rs116645811 G A . .
>>>>> .","assembly_name":"GRCh38","end":26960070,"seq_region_name":"21","transcript_consequences":[{"gene_id":"ENSBTAG00000012351","variant_allele":"A","biotype":"protein_coding","gene_symbol_source":"EntrezGene","consequence_terms":["intron_variant"],"strand":1,"gene_symbol":"ARNT2","transcript_id":"ENSBTAT00000016391"}],"strand":1,"id":"rs116645811","allele_string":"G/A","most_severe_consequence":"intron_variant","start":26960070}, 
>>>>>
>>>>> ...
>>>>>
>>>>> Could be possible to fix assembly name?
>>>>>
>>>>> Thank you for your support,
>>>>>
>>>>> Regards,
>>>>>
>>>>> Paolo
>>>>>
>>>>>
>>>>>
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>>>>
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