[ensembl-dev] Synonymous HGVSp

[Konrad Karczewski]

Ahh, makes sense, thanks!


-Konrad

On Fri, Oct 31, 2014 at 5:19 AM, Will McLaren <wm2 at ebi.ac.uk> wrote:

> Hi Konrad,
> This is done so that particular HGVS notation doesn't break parsers working
> on the INFO field of VCF files (which have key1=value;key2=value2 etc).
> You can switch this off if you like with --no_escape
> Regards
> Will McLaren
> Ensembl Variation
> On 31 October 2014 05:12, Konrad Karczewski <konradk at broadinstitute.org>
> wrote:
>> Hi dev team,
>>
>> When outputting to VCF with --everything (implying --hgvs), the HGVS
>> output for synonymous variants is p.%3D (i.e. the HTML code for equals is
>> being printed out in the VCF) - is this supposed to be "p.="?
>>
>> Thanks!
>> -Konrad
>>
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