[ensembl-dev] REST server replies with "assembly_name":"GRCh38" with other species than human

Paolo Cozzi paolo.cozzi at itb.cnr.it
Mon Oct 13 15:11:00 BST 2014


Dear Kieron,

thank you for your suggestion. I will temporarily fix my script in order 
to retrive the correct assembly via info endpoint. I will wait for VEP 
endpoint bugfix

Regards,

Paolo



Il 13/10/2014 15:42, Kieron Taylor ha scritto:
> Hi Paolo,
>
> Thanks for your bug report. This is clearly an error. While the VEP 
> endpoint output may be reporting the wrong assembly, you can still 
> turn to info/assembly to get the correct response while we figure out 
> where the bug has come from.
>
> http://rest.ensembl.org/info/assembly/cow
>
> Regards,
>
> Kieron Taylor
> Ensembl Core
>
>
> On 13/10/2014 14:28, Paolo Cozzi wrote:
>>
>> Dear all,
>>
>> Using REST server with other species than human, I found always
>> "assembly_name":"GRCh38", for example:
>>
>> $ curl -H "content-type:application/json" -H "accept:application/json"
>> --data '{ "variants" : ["21 26960070 rs116645811 G A . . .", "21
>> 26965148 rs1135638 G A . . ." ] }' 
>> http://rest.ensembl.org/vep/cow/region
>>
>> [{"input":"21 26960070 rs116645811 G A . .
>> .","assembly_name":"GRCh38","end":26960070,"seq_region_name":"21","transcript_consequences":[{"gene_id":"ENSBTAG00000012351","variant_allele":"A","biotype":"protein_coding","gene_symbol_source":"EntrezGene","consequence_terms":["intron_variant"],"strand":1,"gene_symbol":"ARNT2","transcript_id":"ENSBTAT00000016391"}],"strand":1,"id":"rs116645811","allele_string":"G/A","most_severe_consequence":"intron_variant","start":26960070}, 
>>
>> ...
>>
>> Could be possible to fix assembly name?
>>
>> Thank you for your support,
>>
>> Regards,
>>
>> Paolo
>>
>>
>>
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>
>
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