[ensembl-dev] REST server replies with "assembly_name":"GRCh38" with other species than human

[mag]

Hi Paolo,

Thanks again for reporting this.

The issue has been fixed and pushed onto our live server.
Please do not hesitate to report any further issues.


Regards,
Magali

On 13/10/2014 15:11, Paolo Cozzi wrote:
>
> Dear Kieron,
>
> thank you for your suggestion. I will temporarily fix my script in 
> order to retrive the correct assembly via info endpoint. I will wait 
> for VEP endpoint bugfix
>
> Regards,
>
> Paolo
>
>
>
> Il 13/10/2014 15:42, Kieron Taylor ha scritto:
>> Hi Paolo,
>>
>> Thanks for your bug report. This is clearly an error. While the VEP 
>> endpoint output may be reporting the wrong assembly, you can still 
>> turn to info/assembly to get the correct response while we figure out 
>> where the bug has come from.
>>
>> http://rest.ensembl.org/info/assembly/cow
>>
>> Regards,
>>
>> Kieron Taylor
>> Ensembl Core
>>
>>
>> On 13/10/2014 14:28, Paolo Cozzi wrote:
>>>
>>> Dear all,
>>>
>>> Using REST server with other species than human, I found always
>>> "assembly_name":"GRCh38", for example:
>>>
>>> $ curl -H "content-type:application/json" -H "accept:application/json"
>>> --data '{ "variants" : ["21 26960070 rs116645811 G A . . .", "21
>>> 26965148 rs1135638 G A . . ." ] }' 
>>> http://rest.ensembl.org/vep/cow/region
>>>
>>> [{"input":"21 26960070 rs116645811 G A . .
>>> .","assembly_name":"GRCh38","end":26960070,"seq_region_name":"21","transcript_consequences":[{"gene_id":"ENSBTAG00000012351","variant_allele":"A","biotype":"protein_coding","gene_symbol_source":"EntrezGene","consequence_terms":["intron_variant"],"strand":1,"gene_symbol":"ARNT2","transcript_id":"ENSBTAT00000016391"}],"strand":1,"id":"rs116645811","allele_string":"G/A","most_severe_consequence":"intron_variant","start":26960070}, 
>>>
>>> ...
>>>
>>> Could be possible to fix assembly name?
>>>
>>> Thank you for your support,
>>>
>>> Regards,
>>>
>>> Paolo
>>>
>>>
>>>
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>>
>>
>>
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