[ensembl-dev] difference between refseq_import and refseq_human_import
mukhyala at gmail.com
Fri Oct 31 06:00:00 GMT 2014
There are multiple gene sets imported from RefSeq in the human
other_features database in e77.
>*select analysis_id,logic_name,source,count(*) from gene join analysis
using (analysis_id) group by source*
*analysis_id logic_name ** source ** count(*)*
8359 ccds_import ccds 30493
8358 estgene ensembl 30287
8166 refseq_human_import refseq 26652
8360 refseq_import BestRefSeq 27398
8360 refseq_import Curated Genomic 26
8360 refseq_import Gnomon 5363
I am interested in the gene models imported from RefSeq using GRCh38
reference assembly excluding the alternate loci. It looks like genes from
'BestRefSeq' include alternate loci while genes from 'refseq' don't.
Could you please explain what the the difference between them are?
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