[ensembl-dev] a problem when viewing the tophat results 'accepted hits'

Emily Perry emily at ebi.ac.uk
Fri Oct 10 09:01:21 BST 2014

Hi Weiqi

Please do not send emails to both Ensembl helpdesk and Ensembl dev.


On 09/10/2014 20:24, weiqi.wang wrote:
> Hi peers, I just started using galaxy for RNAseq and found the 
> tophat-cufflink really good to use. However, after the tophat2 
> generates “accepted hits” and I try to view it in ensemble via the 
> provided link, the following page on Ensemble always show up. It seems 
> to me that the embedded link is wrongly formatted, but I think this 
> only happens to “accepted hits”, other results such as “delections” 
> etc. are good. Does anyone know how to solve this problem? Thanks!
>   Malformed URL
> .
> The URL used to reach this page may be incomplete or out-of-date.
> A location is required to build this page. For example, chromosomal 
> coordinates:
> http://uswest.ensembl.org/Mus_musculus/Location/View?r=4:136366473-136547301 
> You can also browse this genome via its karyotype 
> <http://uswest.ensembl.org/Mus_musculus/Location/Genome>
> If you think this is an error, or you have any questions, please 
> contact our HelpDesk team <http://uswest.ensembl.org/Help/Contact>.
> .
> Regards
> weiqi
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Dr Emily Perry (Pritchard)
Ensembl Outreach Officer

European Bioinformatics Institute (EMBL-EBI)
European Molecular Biology Laboratory
Wellcome Trust Genome Campus
CB10 1SD

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