[ensembl-dev] Linkage disequilibrium clustering

Mike Pierce mikepierce2000 at gmail.com
Thu Oct 2 14:37:20 BST 2014

A related question, is there a function that calculates/returns LD for a
pair of variants in a specific population?

Because you can use that to calculate a relationship matrix and do your own


On 2 October 2014 14:22, Genomeo Dev <genomeodev at gmail.com> wrote:

> Hi,
> I have a list of SNPs which I want to cluster into Linkage disequilibrium
> blocks assuming European ancestry. I was wondering whether there is a quick
> way to do that using Ensembl variation API?
> Thanks!
> --
> G.
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