[ensembl-dev] mysqldump for Macaca Fascicularis pre-data?

[Anne Lyle]

Hi Jan

You’re right that not all data is provided for “pre” species - we’ve started producing the basic FASTA files (DNA, cDNA, etc) as a matter of routine but that’s about it. I’ll have a look at sorting out a MySQL dump for you, though.

As for plans, I’ll have to leave that up to the genebuilders to comment on.

Regards

Anne



Anne Lyle
Ensembl Web Developer
European Bioinformatics Institute (EMBL-EBI)
East Wing, A3-118, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK

Phone: +44 (0)1223 494178
Email: annelyle at ebi.ac.uk
Web: www.ensembl.org





On 6 Oct 2014, at 19:03, Jan Vogel <jan.vogel at gmail.com> wrote:

> 
> Hello Ensembl, 
> 
> I've seen that the crab-eating macaque assembly is up in pre.ensembl.org, based on MacFas5.0: 
> 
> http://pre.ensembl.org/Macaca_fascicularis/Info/Index/
> 
> This is great, as I'm really interested in this organism and I like to work it. 
> 
> I'm looking for the mysql dump for Macaca Fascicularis so I can re-create the core database in m own environment - however, I did not find anything on the usual FTP server: 
> 
> ftp://ftp.ensembl.org/pub/pre/gtf/macaca_fascicularis/
> 
> I also couldn't find the pre-db on the public mysql server…. 
> 
> Any chance ensembl can provide this data ? Or does it exist and i just didn't find it ? 
> 
> I'm aware that this is  an ensembl pre-build, that not all standard data is available and this is all just "early-access". 
> 
> On a different note, it would also be great to know what the general plans with this species are - Is Ensembl planning on a full build or a projection build ? And is there a rough date when such a build will be released ? 
> 
> Thanks, 
> 
>    Jan Vogel 
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