[ensembl-dev] Get chromosome gene summaries automatically

[mag]

Hi Fengyuan,

If you are familiar with the perl API, the statistics are stored as 
attributes on the slice.
You can fetch it with the following code:

    my $slice_adaptor = $registry->get_adaptor('human', 'core', 'Slice');
    my $chrom = $slice_adaptor->fetch_by_region('chromosome', '1');
    my $attribs = $chrom->get_all_Attributes();

    foreach my $attrib (@$attribs) {
       print $attrib->name  . ": " . $attrib->value . "\n";
    }


Hope that helps,
Magali

On 02/10/2014 14:43, Fengyuan Hu wrote:
> Dear devs,
>
> Is there a way to get chromosome gene summary information by a script 
> rather than looking at the webpage, e.g. 
> http://www.ensembl.org/Homo_sapiens/Location/Chromosome?r=1:88112229-88576529
>
> Best wishes,
> Fengyuan
>
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