[ensembl-dev] Is Perl API already version 66?

Bert Overduin bert at ebi.ac.uk
Sun Jan 8 22:58:08 GMT 2012


Hello Sergei,

I suspect you have downloaded the head code instead of the 65 branch ....

Cheers,
Bert

On Sun, Jan 8, 2012 at 10:30 PM, Sergei Manakov <manakov at ebi.ac.uk> wrote:
> Hello,
>
> I downloaded new API from ensembl website yesterday, and it appears to
> be of version 66.
>
> I load registry like that:
>
> my $registry = 'Bio::EnsEMBL::Registry';
> $registry->load_registry_from_db(
>  '-host'       => 'ensembldb.ensembl.org',
>  '-user'       => 'anonymous',
>  '-db_version' => '65'
> );
>
> I get this warning: "For mus_musculus_core_65_37 there is a difference in the
> software release (66) and the database release (65). You should update
> one of these to ensure that your script does not crash."
>
> And if I change '-db_version' => '66' the the script crashes saying:
> "MSG: Mouse is not a valid species name (check DB and API version)".
> Clearly, "Mouse" is a valid species name, so I assume that Ensembl 66
> is not ready yet.
>
> If you know where the problem might be, please let me know.
>
> thanks,
> Sergei
>
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-- 
Bert Overduin, Ph.D.
Vertebrate Genomics Team

EMBL - European Bioinformatics Institute
Wellcome Trust Genome Campus
Hinxton, Cambridge CB10 1SD
United Kingdom

http://www.ebi.ac.uk/~bert

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