[ensembl-dev] Is Perl API already version 66?

[Sergei Manakov]

Hi Bert,

I just copied links from
http://uswest.ensembl.org/info/docs/api/api_installation.html and
downloaded them with wget.

Is this not a good way of downloading the Perl API?

thanks,
Sergei



On 8 January 2012 14:58, Bert Overduin <bert at ebi.ac.uk> wrote:
> Hello Sergei,
>
> I suspect you have downloaded the head code instead of the 65 branch ....
>
> Cheers,
> Bert
>
> On Sun, Jan 8, 2012 at 10:30 PM, Sergei Manakov <manakov at ebi.ac.uk> wrote:
>> Hello,
>>
>> I downloaded new API from ensembl website yesterday, and it appears to
>> be of version 66.
>>
>> I load registry like that:
>>
>> my $registry = 'Bio::EnsEMBL::Registry';
>> $registry->load_registry_from_db(
>>  '-host'       => 'ensembldb.ensembl.org',
>>  '-user'       => 'anonymous',
>>  '-db_version' => '65'
>> );
>>
>> I get this warning: "For mus_musculus_core_65_37 there is a difference in the
>> software release (66) and the database release (65). You should update
>> one of these to ensure that your script does not crash."
>>
>> And if I change '-db_version' => '66' the the script crashes saying:
>> "MSG: Mouse is not a valid species name (check DB and API version)".
>> Clearly, "Mouse" is a valid species name, so I assume that Ensembl 66
>> is not ready yet.
>>
>> If you know where the problem might be, please let me know.
>>
>> thanks,
>> Sergei
>>
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>
>
>
> --
> Bert Overduin, Ph.D.
> Vertebrate Genomics Team
>
> EMBL - European Bioinformatics Institute
> Wellcome Trust Genome Campus
> Hinxton, Cambridge CB10 1SD
> United Kingdom
>
> http://www.ebi.ac.uk/~bert
>
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