[ensembl-dev] Plant API download?

Dan Staines dstaines at ebi.ac.uk
Fri Jan 6 11:48:58 GMT 2012


branch-ensemblgenomes-12-65 now in over ensembl-ap (missing due to 
internal miscommunication...) so please have another try!

Dan.

On 01/06/2012 11:31 AM, Dan Staines wrote:
> Looks like the branch is missing. I'll try and get this sorted for you...
>
> On 01/06/2012 11:25 AM, simon andrews (BI) wrote:
>> I’ve been trying to download the core plant API bundle using the link on
>> the website at:
>> _http://plants.ensembl.org/info/docs/api/api_installation.html_
>> Which points to:
>> _http://cvs.sanger.ac.uk/cgi-bin/viewvc.cgi/ensembl.tar.gz?root=ensembl&only_with_tag=branch-ensemblgenomes-12-65&view=tar_
>>
>> <http://cvs.sanger.ac.uk/cgi-bin/viewvc.cgi/ensembl.tar.gz?root=ensembl&only_with_tag=branch-ensemblgenomes-12-65&view=tar>
>>
>> ..but I’m only getting a tiny file returned (29 bytes).
>> I tried pulling the files directly out of CVS using:
>> cvs -d :pserver:cvsuser at cvs.sanger.ac.uk:/cvsroot/ensembl checkout -r
>> branch-ensemblgenomes-12-65 ensembl
>> but although I get a load of messages saying:
>> cvs checkout: Updating ensembl
>> cvs checkout: Updating ensembl/Apache
>> cvs checkout: Updating ensembl/Apache/EnsEMBL
>> cvs checkout: Updating ensembl/cgi-bin
>> cvs checkout: Updating ensembl/corba
>> cvs checkout: Updating ensembl/corba/artemis
>> cvs checkout: Updating ensembl/corba/popt
>> cvs checkout: Updating ensembl/corba/popt/po
>> cvs checkout: Updating ensembl/corba/seq
>> cvs checkout: Updating ensembl/corba/simpleobjectman
>> cvs checkout: Updating ensembl/docs
>> I don’t actually get anything written to my local directory. I also see
>> a warning saying:
>> cvs checkout: warning: cannot open history file
>> `/cvsroot/ensembl/CVSROOT/history' for write: Permission denied
>> ..which may or may not be relevant.
>> Any clues?
>> Cheers
>> Simon.
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>

-- 
Dan Staines, PhD               Ensembl Genomes Technical Coordinator
EMBL-EBI                       Tel: +44-(0)1223-492507
Wellcome Trust Genome Campus   Fax: +44-(0)1223-494468
Cambridge CB10 1SD, UK         http://www.ensemblgenomes.org/




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