[ensembl-dev] Plant API download?

[simon andrews (BI)]

-----Original Message-----
> From: Dan Staines
> Subject: Re: [ensembl-dev] Plant API download?
>
> branch-ensemblgenomes-12-65 now in over ensembl-ap (missing due to internal miscommunication...) so please have another try!

Thanks, it worked fine this time.

A second (possibly minor) problem.  I'm trying to do some processing on the Glycine max genome, and get this warning:

-------------------- WARNING ----------------------
MSG: Using implicit mapping path between 'chromosome:1.0' and 'scaffold:1.0' coord systems.
An explicit 'assembly.mapping' entry should be added to the meta table.
Example: 'chromosome:1.0|chunk:1.0|scaffold:1.0'

FILE: EnsEMBL/DBSQL/CoordSystemAdaptor.pm LINE: 708
CALLED BY: EnsEMBL/DBSQL/AssemblyMapperAdaptor.pm  LINE: 222
Ensembl API version = 65
---------------------------------------------------

The processing is still working, but is this something I should be concerned about?

Cheers

Simon.

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