[ensembl-dev] missing some used_ref fields in VEP json output

[Diana Lemos]

Hi Michael,

We have added a fix to JSON output which will be available in the next 
Ensembl release.


Best wishes,

Diana



On 26/10/2021 15:12, Diana Lemos wrote:
>
> Hi Michael,
>
> Thank you for reporting this issue.
>
> The JSON output does not include used_ref and given_ref if the ref is 
> "-" which is the case for your example. We are working on a fix.
>
>
> Best wishes,
>
> Diana
>
>
> On 22/10/2021 22:30, Michael Yourshaw wrote:
>> When I updated to the latest VEP I encountered a handful of 
>> transcripts in the json output that did not contain a used_ref field. 
>> This seems to be a problem introduced recently and does not affect 
>> the great majority of variants.
>>
>> An example record:
>>
>> is attached.
>>
>>
>> ॐ
>> Michael Yourshaw
>> myourshaw at gmail.com <mailto:myourshaw at ucla.edu>
>>
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