[ensembl-dev] release 105 MySQL protein domain data severely truncated

Anne Lyle annelyle at ebi.ac.uk
Mon Jan 24 14:39:34 GMT 2022

Hi Eric

We are having problems with a number of databases from release 105, including on the public MySQL server - it looks like there was a glitch in distributing these databases during the release process. We’re looking into it and will hopefully be able to fix it soon.

Apologies for the inconvenience


Anne Lyle
Ensembl Web Developer

> On 20 Jan 2022, at 16:24, Eric Engelhard <eric.engelhard at regeneron.com> wrote:
> Hello Ensembl team,
> I am working from Ensembl MySQL downloads and have discovered that protein domain data from ftp://ftp.ensembl.org/pub/current_mysql/homo_sapiens_core_105_38/ 
> and ftp://ftp.ensembl.org/pub/current_mysql/mus_musculus_core_105_39/ is severely truncated. This is directly impacting the Core Perl API, which is only able to extract 
> domain information for about 20 proteins. Specifically, the interpro.txt.gz files for each data set are empty files. I am still comparing other files against release 104 for size
> anomalies.
> Is this a know issue?
> Thanks,
> Eric
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