[ensembl-dev] Accessing transcript flags though the API

[Simon Andrews]

Brilliant, thanks.   I’ll dig through that and see how I get on.

From: Dev <dev-bounces at ensembl.org> On Behalf Of Emily Perry
Sent: 21 March 2019 12:55
To: Ensembl developers list <dev at ensembl.org>
Subject: Re: [ensembl-dev] Accessing transcript flags though the API

Hi Simon

TSL and APPRIS are both stored as attributes on the transcript. You can get them with get_all_Attributes:
http://www.ensembl.org/info/docs/Doxygen/core-api/classBio_1_1EnsEMBL_1_1Transcript.html#a59f9ff2079a28ba80bc8b62a5e636327

This will give you a list of hashes where you can extract the information.

All the best

Emily


On 21 Mar 2019, at 11:46, Simon Andrews <simon.andrews at babraham.ac.uk<mailto:simon.andrews at babraham.ac.uk>> wrote:

I see that on the Ensembl website the transcript table has some really useful flags on it, things such as Transcript Support Level and APRIS category.  I’d really like to add these to the annotations I’m building.  Is there an easy way to access these through the Perl API?

Thanks

Simon.

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Dr Emily Perry (Pritchard)
Ensembl Outreach Project Leader

European Bioinformatics Institute (EMBL-EBI)
European Molecular Biology Laboratory
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