[ensembl-dev] Accessing transcript flags though the API

[Emily Perry]

Hi Simon

TSL and APPRIS are both stored as attributes on the transcript. You can get them with get_all_Attributes:
http://www.ensembl.org/info/docs/Doxygen/core-api/classBio_1_1EnsEMBL_1_1Transcript.html#a59f9ff2079a28ba80bc8b62a5e636327 <http://www.ensembl.org/info/docs/Doxygen/core-api/classBio_1_1EnsEMBL_1_1Transcript.html#a59f9ff2079a28ba80bc8b62a5e636327>

This will give you a list of hashes where you can extract the information.

All the best

Emily

> On 21 Mar 2019, at 11:46, Simon Andrews <simon.andrews at babraham.ac.uk> wrote:
> 
> I see that on the Ensembl website the transcript table has some really useful flags on it, things such as Transcript Support Level and APRIS category.  I’d really like to add these to the annotations I’m building.  Is there an easy way to access these through the Perl API?
> 
> Thanks
>  
> Simon.
>  
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--

Dr Emily Perry (Pritchard) 
Ensembl Outreach Project Leader 

European Bioinformatics Institute (EMBL-EBI) 
European Molecular Biology Laboratory 
Wellcome Trust Genome Campus 
Hinxton 
Cambridge 
CB10 1SD 
UK

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