[ensembl-dev] VEP per-allele --variant_class...

Joseph A Prinz joseph.prinz at duke.edu
Thu Mar 28 17:42:16 GMT 2019


Hi VEP devs,

I was wondering if you might be able to make a per-allele version of --variant_class?

Currently, as I understand it, one variant class is given for all alleles called of a VCF record. 
This can be confusing if multiple conflicting classes are actually called.

It would be nice if there was an analogue to 'allele_string' that listed a classes for each allele called.

Thank you for your consideration!
Joey


More information about the Dev mailing list