[ensembl-dev] BED file format on custom track

[Liam Thompson]

Hi Anne

Thanks for the update. I tried uploading it again, but it says it 
doesn't validate as a BED file.

Not sure what else to try, I will fiddle with it this afternoon to see 
if I can find what is out of place.

Regards
Liam





On 2016-10-06 11:36, Anne Lyle wrote:
> Hi Liam
>
> BED should be fine - I’ll have a look at your file and see if there’s some reason it’s breaking our validator. The validation is quite new code, so there may be an error in its logic.
>
> Cheers
>
> Anne
>
>
>> On 5 Oct 2016, at 19:01, Liam Thompson <dejmail at gmail.com> wrote:
>>
>> Hi Anne
>>
>> Thanks for the reply. I'm working from a Linux system, but not sure that
>> makes any difference.
>>
>> I have just tried it on Firefox v. 49, and the uploader just doesn't
>> seem to go anywhere, so I can confirm that behaviour. It also happens in
>> Private mode, so it's not a plugin.
>>
>> I tried in Google Chrome (53.0.2785.143 (64-bit)) normal and
>> Private/Incognito mode and the same thing happens.
>>
>> Is there another file format you would recommend that I can use to
>> display short sequences of interest in a track in the genome browser ?
>>
>> Kind regards
>> Liam
>>
>>
>>> ------------------------------
>>>
>>> Message: 2
>>> Date: Wed, 5 Oct 2016 17:14:57 +0100
>>> From: Anne Lyle <annelyle at ebi.ac.uk>
>>> Subject: Re: [ensembl-dev] BED file format on custom track
>>> To: Ensembl developers list <dev at ensembl.org>
>>> Message-ID: <3FBA2DBE-8EB3-4317-9785-A1FD61902772 at ebi.ac.uk>
>>> Content-Type: text/plain; charset=utf-8
>>>
>>> Hi Liam
>>>
>>> Are you using Firefox (version 49) by any chance? We?ve seen some upload issues in this browser, so it could be related. If not, I?ll have a look at your file and see if there?s any reason why our parser isn?t reading it correctly.
>>>
>>> Cheers
>>>
>>> Anne
>>
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