[ensembl-dev] BED file format on custom track
Anne Lyle
annelyle at ebi.ac.uk
Thu Oct 6 17:06:49 BST 2016
Hi Liam
It may not be your file, so don’t worry too much about it. I’ll have a look as soon as I can.
Cheers
Anne
> On 6 Oct 2016, at 11:41, Liam Thompson <dejmail at gmail.com> wrote:
>
> Hi Anne
>
> Thanks for the update. I tried uploading it again, but it says it doesn't validate as a BED file.
>
> Not sure what else to try, I will fiddle with it this afternoon to see if I can find what is out of place.
>
> Regards
> Liam
>
>
>
>
>
> On 2016-10-06 11:36, Anne Lyle wrote:
>> Hi Liam
>>
>> BED should be fine - I’ll have a look at your file and see if there’s some reason it’s breaking our validator. The validation is quite new code, so there may be an error in its logic.
>>
>> Cheers
>>
>> Anne
>>
>>
>>> On 5 Oct 2016, at 19:01, Liam Thompson <dejmail at gmail.com> wrote:
>>>
>>> Hi Anne
>>>
>>> Thanks for the reply. I'm working from a Linux system, but not sure that
>>> makes any difference.
>>>
>>> I have just tried it on Firefox v. 49, and the uploader just doesn't
>>> seem to go anywhere, so I can confirm that behaviour. It also happens in
>>> Private mode, so it's not a plugin.
>>>
>>> I tried in Google Chrome (53.0.2785.143 (64-bit)) normal and
>>> Private/Incognito mode and the same thing happens.
>>>
>>> Is there another file format you would recommend that I can use to
>>> display short sequences of interest in a track in the genome browser ?
>>>
>>> Kind regards
>>> Liam
>>>
>>>
>>>> ------------------------------
>>>>
>>>> Message: 2
>>>> Date: Wed, 5 Oct 2016 17:14:57 +0100
>>>> From: Anne Lyle <annelyle at ebi.ac.uk>
>>>> Subject: Re: [ensembl-dev] BED file format on custom track
>>>> To: Ensembl developers list <dev at ensembl.org>
>>>> Message-ID: <3FBA2DBE-8EB3-4317-9785-A1FD61902772 at ebi.ac.uk>
>>>> Content-Type: text/plain; charset=utf-8
>>>>
>>>> Hi Liam
>>>>
>>>> Are you using Firefox (version 49) by any chance? We?ve seen some upload issues in this browser, so it could be related. If not, I?ll have a look at your file and see if there?s any reason why our parser isn?t reading it correctly.
>>>>
>>>> Cheers
>>>>
>>>> Anne
>>>
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