[ensembl-dev] Get dbNSFP fields from VEP REST API?

[mr6]

Hi Guillermo,

The following document lists the fields available for the dbNSFP 
plugin:
https://drive.google.com/file/d/0B60wROKy6OqcSFNBbWVjNWl5UjQ/view

You can see an example of LRT_pred data here:
http://rest.ensembl.org/vep/human/id/rs699?content-type=application/json;dbNSFP=LRT_pred

However, the data is not always available and empty fields will not be 
included in the output.


Regards,
Magali

On 2016-04-19 17:31, Guillermo del Angel wrote:
> Hi everyone!
> Is getting dbNSFP fields supported from the VEP RESTful API? I see
> that there is an optional argument to specify which dbNSFP columns to
> get at http://rest.ensembl.org/documentation/info/vep_hgvs_get [1]
> 
> However, the following command doesn't seem to return the requested 
> field:
> 
> curl 'http://rest.ensembl.org/vep/human/hgvs/ENST00000374840:c.571G
> [2]>A?CSN=1;hgvs=1;canonical=1;ccds=1;domains=1;dbNSFP=LRT_pred'   -H
> 'Content-type:application/json'
> 
> Enclosing the argument in double quotes doesn't make any difference.
> 
> Thanks,
> 
> Guillermo
> 
> 
> 
> Links:
> ------
> [1] http://rest.ensembl.org/documentation/info/vep_hgvs_get
> [2] http://rest.ensembl.org/vep/human/hgvs/ENST00000374840:c.571G
> 
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