[ensembl-dev] VEP script error release 84

[Genomeo Dev]

Hi Ensembl team,

I have installed VEP script release 84 and found the error below when
running it. Your help will be appreciated.

Thanks,

G.

*[ggaw84 at hpclogin2 variant_annotation]$ ./ping_ensembl_v84.pl
<http://ping_ensembl_v84.pl> *

Installation is good. Connection to Ensembl works and you can query the
human core database

*[ggaw84 at hpclogin2 variant_annotation]$ ./variant_effect_predictor_v84.pl
<http://variant_effect_predictor_v84.pl> -i example_GRCh38.vcf --database*

Bareword found where operator expected at ./variant_effect_predictor_v84.pl
line 997, near "s/\_$//r"

syntax error at ./variant_effect_predictor_v84.pl line 997, near "s/\_$//r"

Execution of ./variant_effect_predictor_v84.pl aborted due to compilation
errors.

*[ggaw84 at hpclogin2 variant_annotation]$ grep -n .
variant_effect_predictor_v81.pl <http://variant_effect_predictor_v81.pl> |
grep -b5 -a5 '^997'*

992:    }

993:

994:    # warn user DB will be used for SIFT/PolyPhen/HGVS/frequency/LRG

995:    if(defined($config->{cache})) {

996:

997:        # these two def depend on DB

998:        foreach my $param(grep {defined $config->{$_}} qw(hgvs lrg
check_sv check_ref)) {

999:            debug("INFO: Database will be accessed when using
--$param") unless defined($config->{quiet}) or ($param =~ /hgvs|check_ref/
and defined($config->{fasta}));

1000:        }

1001:

1002:        debug("INFO: Database will be accessed when using
--check_frequency with population ".$config->{freq_pop}) if
!defined($config->{quiet}) and defined($config->{check_frequency}) &&
$config->{freq_pop} !~ /1kg.*(all|afr|amr|asn|eur)/i;
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