[ensembl-dev] Fwd: Ensembl VEP: FASTA gzip to bgzip conversion failed

[Rishi Nag]

That looks good, you should be able to proceed

Regards

Rishi

On 11/04/2016 13:57, Platon workaccount wrote:
> perl biodbhts/t/00_load.t
>
> 1..3
> ok 1 - use Bio::DB::HTS;
> ok 2 - use Bio::DB::HTS::Tabix;
> ok 3 - use Bio::DB::HTS::Tabix::Iterator;
>
> пн, 11 апр. 2016 г. в 15:41, Rishi Nag <rishi at ebi.ac.uk <mailto:rishi at ebi.ac.uk>>:
>
>
>     Hi
>
>     OK - there are some further files that should be moved:
>
>     Can you try
>     mv ~/ensembl-tools-release-84/scripts/variant_effect_predictor/Bio/HTS.* ~/ensembl-tools-release-84/scripts/variant_effect_predictor/Bio/DB
>
>     and then let me know how it goes?
>
>     Regards
>
>     Rishi
>
>     On 10/04/2016 20:38, Platon workaccount wrote:
>      > ~/ensembl-tools-release-84/scripts/variant_effect_predictor/Bio$ ls
>      > DB HTS.c HTS.o HTS.pm HTS.xs
>      >
>      > ~/ensembl-tools-release-84/scripts/variant_effect_predictor/Bio/DB$ ls
>      > HTS
>      >
>      > ~/ensembl-tools-release-84/scripts/variant_effect_predictor/Bio/DB/HTS$ ls
>      > Alignment.pm AlignWrapper.pm Constants.pm Faidx.c Faidx.o Faidx.pm Faidx.xs FetchIterator.pm Pileup.pm PileupWrapper.pm Query.pm ReadIterator.pm
>      > Segment.pm Tabix Tabix.pm Target.pm VCF.pm
>
>     _______________________________________________
>     Dev mailing list Dev at ensembl.org <mailto:Dev at ensembl.org>
>     Posting guidelines and subscribe/unsubscribe info: http://lists.ensembl.org/mailman/listinfo/dev
>     Ensembl Blog: http://www.ensembl.info/
>
>
>
> _______________________________________________
> Dev mailing list    Dev at ensembl.org
> Posting guidelines and subscribe/unsubscribe info: http://lists.ensembl.org/mailman/listinfo/dev
> Ensembl Blog: http://www.ensembl.info/
>