[ensembl-dev] Fwd: Ensembl VEP: FASTA gzip to bgzip conversion failed

[Platon workaccount]

perl biodbhts/t/00_load.t

1..3
ok 1 - use Bio::DB::HTS;
ok 2 - use Bio::DB::HTS::Tabix;
ok 3 - use Bio::DB::HTS::Tabix::Iterator;

пн, 11 апр. 2016 г. в 15:41, Rishi Nag <rishi at ebi.ac.uk>:

>
> Hi
>
> OK - there are some further files that should be moved:
>
> Can you try
> mv ~/ensembl-tools-release-84/scripts/variant_effect_predictor/Bio/HTS.*
> ~/ensembl-tools-release-84/scripts/variant_effect_predictor/Bio/DB
>
> and then let me know how it goes?
>
> Regards
>
> Rishi
>
> On 10/04/2016 20:38, Platon workaccount wrote:
> > ~/ensembl-tools-release-84/scripts/variant_effect_predictor/Bio$ ls
> > DB HTS.c HTS.o HTS.pm HTS.xs
> >
> > ~/ensembl-tools-release-84/scripts/variant_effect_predictor/Bio/DB$ ls
> > HTS
> >
> > ~/ensembl-tools-release-84/scripts/variant_effect_predictor/Bio/DB/HTS$
> ls
> > Alignment.pm AlignWrapper.pm Constants.pm Faidx.c Faidx.o Faidx.pm
> Faidx.xs FetchIterator.pm Pileup.pm PileupWrapper.pm Query.pm
> ReadIterator.pm
> > Segment.pm Tabix Tabix.pm Target.pm VCF.pm
>
> _______________________________________________
> Dev mailing list    Dev at ensembl.org
> Posting guidelines and subscribe/unsubscribe info:
> http://lists.ensembl.org/mailman/listinfo/dev
> Ensembl Blog: http://www.ensembl.info/
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://mail.ensembl.org/pipermail/dev_ensembl.org/attachments/20160411/e626cd1a/attachment.html>