[ensembl-dev] Fwd: Ensembl VEP: FASTA gzip to bgzip conversion failed
Platon workaccount
platon.work at gmail.com
Wed Apr 13 00:56:19 BST 2016
Thanks. VEP has been installed successfully. Will the installation be
simplified in the future?
пн, 11 апр. 2016 г. в 16:53, Rishi Nag <rishi at ebi.ac.uk>:
>
> That looks good, you should be able to proceed
>
> Regards
>
> Rishi
>
> On 11/04/2016 13:57, Platon workaccount wrote:
> > perl biodbhts/t/00_load.t
> >
> > 1..3
> > ok 1 - use Bio::DB::HTS;
> > ok 2 - use Bio::DB::HTS::Tabix;
> > ok 3 - use Bio::DB::HTS::Tabix::Iterator;
> >
> > пн, 11 апр. 2016 г. в 15:41, Rishi Nag <rishi at ebi.ac.uk <mailto:
> rishi at ebi.ac.uk>>:
> >
> >
> > Hi
> >
> > OK - there are some further files that should be moved:
> >
> > Can you try
> > mv
> ~/ensembl-tools-release-84/scripts/variant_effect_predictor/Bio/HTS.*
> ~/ensembl-tools-release-84/scripts/variant_effect_predictor/Bio/DB
> >
> > and then let me know how it goes?
> >
> > Regards
> >
> > Rishi
> >
> > On 10/04/2016 20:38, Platon workaccount wrote:
> > > ~/ensembl-tools-release-84/scripts/variant_effect_predictor/Bio$
> ls
> > > DB HTS.c HTS.o HTS.pm HTS.xs
> > >
> > >
> ~/ensembl-tools-release-84/scripts/variant_effect_predictor/Bio/DB$ ls
> > > HTS
> > >
> > >
> ~/ensembl-tools-release-84/scripts/variant_effect_predictor/Bio/DB/HTS$ ls
> > > Alignment.pm AlignWrapper.pm Constants.pm Faidx.c Faidx.o
> Faidx.pm Faidx.xs FetchIterator.pm Pileup.pm PileupWrapper.pm Query.pm
> ReadIterator.pm
> > > Segment.pm Tabix Tabix.pm Target.pm VCF.pm
> >
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