[ensembl-dev] Fwd: Ensembl VEP: FASTA gzip to bgzip conversion failed

[Platon workaccount]

Thanks. VEP has been installed successfully. Will the installation be
simplified in the future?

пн, 11 апр. 2016 г. в 16:53, Rishi Nag <rishi at ebi.ac.uk>:

>
> That looks good, you should be able to proceed
>
> Regards
>
> Rishi
>
> On 11/04/2016 13:57, Platon workaccount wrote:
> > perl biodbhts/t/00_load.t
> >
> > 1..3
> > ok 1 - use Bio::DB::HTS;
> > ok 2 - use Bio::DB::HTS::Tabix;
> > ok 3 - use Bio::DB::HTS::Tabix::Iterator;
> >
> > пн, 11 апр. 2016 г. в 15:41, Rishi Nag <rishi at ebi.ac.uk <mailto:
> rishi at ebi.ac.uk>>:
> >
> >
> >     Hi
> >
> >     OK - there are some further files that should be moved:
> >
> >     Can you try
> >     mv
> ~/ensembl-tools-release-84/scripts/variant_effect_predictor/Bio/HTS.*
> ~/ensembl-tools-release-84/scripts/variant_effect_predictor/Bio/DB
> >
> >     and then let me know how it goes?
> >
> >     Regards
> >
> >     Rishi
> >
> >     On 10/04/2016 20:38, Platon workaccount wrote:
> >      > ~/ensembl-tools-release-84/scripts/variant_effect_predictor/Bio$
> ls
> >      > DB HTS.c HTS.o HTS.pm HTS.xs
> >      >
> >      >
> ~/ensembl-tools-release-84/scripts/variant_effect_predictor/Bio/DB$ ls
> >      > HTS
> >      >
> >      >
> ~/ensembl-tools-release-84/scripts/variant_effect_predictor/Bio/DB/HTS$ ls
> >      > Alignment.pm AlignWrapper.pm Constants.pm Faidx.c Faidx.o
> Faidx.pm Faidx.xs FetchIterator.pm Pileup.pm PileupWrapper.pm Query.pm
> ReadIterator.pm
> >      > Segment.pm Tabix Tabix.pm Target.pm VCF.pm
> >
> >     _______________________________________________
> >     Dev mailing list Dev at ensembl.org <mailto:Dev at ensembl.org>
> >     Posting guidelines and subscribe/unsubscribe info:
> http://lists.ensembl.org/mailman/listinfo/dev
> >     Ensembl Blog: http://www.ensembl.info/
> >
> >
> >
> > _______________________________________________
> > Dev mailing list    Dev at ensembl.org
> > Posting guidelines and subscribe/unsubscribe info:
> http://lists.ensembl.org/mailman/listinfo/dev
> > Ensembl Blog: http://www.ensembl.info/
> >
>
> _______________________________________________
> Dev mailing list    Dev at ensembl.org
> Posting guidelines and subscribe/unsubscribe info:
> http://lists.ensembl.org/mailman/listinfo/dev
> Ensembl Blog: http://www.ensembl.info/
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://mail.ensembl.org/pipermail/dev_ensembl.org/attachments/20160412/433dd3d0/attachment.html>