[ensembl-dev] VEP CDS_position start/end coordinates

Guillermo Marco Puche guillermo.marco at sistemasgenomicos.com
Tue Sep 8 13:35:29 BST 2015


Ok I'm sorry I just found a record where I obtain start-end position. 
Forget the question.
I can assume that start/end position is the same if only one coordinate 
is found in field.

Regards,
Guillermo.

On 08/09/15 14:30, Guillermo Marco Puche wrote:
> Hello,
>
> Is it possible to retrieve *cds_start* and *cds_end* positions from 
> CDS_position field in VEP when using VCF as output format?
> I would like to get start/end also for cdna and protein.
>
> In VCF output I see a unique coordiante in those fields 
> (*CDS_position, Protein_position and cDNA_position*) however in 
> http://www.ensembl.org/info/docs/tools/vep/vep_formats.html#output I 
> can see start/end (at least for JSON output).
>
> Thank you!
>
> Regards,
> Guillermo.
>
>
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