[ensembl-dev] VEP CDS_position start/end coordinates
Guillermo Marco Puche
guillermo.marco at sistemasgenomicos.com
Tue Sep 8 13:30:25 BST 2015
Hello,
Is it possible to retrieve *cds_start* and *cds_end* positions from
CDS_position field in VEP when using VCF as output format?
I would like to get start/end also for cdna and protein.
In VCF output I see a unique coordiante in those fields (*CDS_position,
Protein_position and cDNA_position*) however in
http://www.ensembl.org/info/docs/tools/vep/vep_formats.html#output I can
see start/end (at least for JSON output).
Thank you!
Regards,
Guillermo.
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