[ensembl-dev] VEP CDS_position start/end coordinates

[Will McLaren]

Correct, yes, you can assume they are the same unless there are a "-"
separated pair of coords.

Will

On 8 September 2015 at 13:35, Guillermo Marco Puche <
guillermo.marco at sistemasgenomicos.com> wrote:

> Ok I'm sorry I just found a record where I obtain start-end position.
> Forget the question.
> I can assume that start/end position is the same if only one coordinate is
> found in field.
>
> Regards,
> Guillermo.
>
>
> On 08/09/15 14:30, Guillermo Marco Puche wrote:
>
> Hello,
>
> Is it possible to retrieve *cds_start* and *cds_end* positions from
> CDS_position field in VEP when using VCF as output format?
> I would like to get start/end also for cdna and protein.
>
> In VCF output I see a unique coordiante in those fields (*CDS_position,
> Protein_position and cDNA_position*) however in
> <http://www.ensembl.org/info/docs/tools/vep/vep_formats.html#output>
> http://www.ensembl.org/info/docs/tools/vep/vep_formats.html#output I can
> see start/end (at least for JSON output).
>
> Thank you!
>
> Regards,
> Guillermo.
>
>
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