[ensembl-dev] Hello, Abount 1KG.phase3 data ?

[Kerstin Howe]

With my GRC hat on, I feel the urge to recommend http://www.ncbi.nlm.nih.gov/genome/tools/remap ...

Kerstin


On 12 Jun 2015, at 11:59, Anne Lyle <annelyle at ebi.ac.uk> wrote:

> We use CrossMap for our assembly converter tool - you can input VCF files, though it will take a long time with large amounts of data.
> 
> If you don’t want to use the online tool, you will need to download and install CrossMap (a Python script) and also obtain our chain files and FASTA files, which I think are available from the FTP site.
> 
> Cheers
> 
> Anne
> 
> 
>> On 12 Jun 2015, at 09:27, namchul ghim <chulghim at gmail.com> wrote:
>> 
>> Really thanks..
>> 
>> If it is possible, can i get the liftOver tools and  how to use ?
>>   ((  GRCh37  -> GRCh38   ))
>> 
>> 
>> 
>> 
>> 
>> 
>> On Fri, Jun 12, 2015 at 5:15 PM, Will McLaren <wm2 at ebi.ac.uk> wrote:
>> Hello,
>> 
>> Sorry, this is a bit hard to find on our FTP.
>> 
>> ftp://ftp.ensembl.org/pub/grch37/release-79/variation/vcf/homo_sapiens/
>> 
>> Will McLaren
>> Ensembl Variation
>> 
>> 
>> 
>> On 12 June 2015 at 05:44, namchul ghim <chulghim at gmail.com> wrote:
>> I want to download 1KG.phase3.GRCh37.vcf.gz 
>> Can i get it?
>> 
>> 1KG.phase3.GRCh38.vcf.gz exist.
>> but I can't find GRCh37 version...
>> 
>> Thanks..
>> 
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---
Dr. Kerstin Howe
Senior Scientific Manager
Genome Reference Informatics
kerstin at sanger.ac.uk
orcid.org/0000-0003-2237-513X

Wellcome Trust Sanger Institute
Hinxton, Cambridge CB10 1SA, UK

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