[ensembl-dev] Which ensembl's data version is used for GRch37 annotation with VEP v80?

[Kirsley CHENNEN]

Yes it worked! Thanks!

Best,
Kirsley




On 03/06/2015 10:42, Will McLaren wrote:
> You can access the homo_sapiens_*_80_37 databases on port 3337 of our 
> public database server e.g.:
>
> mysql -hensembldb.ensembl.org <http://hensembldb.ensembl.org> -P3337 
> -uanonymous
>
> Will
>
> On 3 June 2015 at 09:37, Kirsley CHENNEN <kchennen at unistra.fr 
> <mailto:kchennen at unistra.fr>> wrote:
>
>     Hi Will,
>                 Thanks for the quick answer! So if I want to match the
>     VEP (v80) results on Ensembl's data (ex: retrieving annotations or
>     xrefs ...etc), I should download the data from
>     ftp://ftp.ensembl.org/pub/grch37/release-80/ right as there aren't
>     any public mysql server up with 'homo_sapiens_core_80_37' on
>     http://grch37.ensembl.org/info/data/mysql.html right?
>
>     Best,
>     Kirsley
>
>
>     On 03/06/2015 10:22, Will McLaren wrote:
>>     Hi Kirsley,
>>
>>     The gene set is from Ensembl 75, but variation and regulation
>>     data have been updated.
>>
>>     See http://grch37.ensembl.org/index.html for more information.
>>
>>     Regards
>>
>>     Will McLaren
>>     Ensembl Variation
>>
>>     On 3 June 2015 at 09:17, Kirsley CHENNEN <kchennen at unistra.fr
>>     <mailto:kchennen at unistra.fr>> wrote:
>>
>>         Hi,
>>             If I use the latest version of VEP (v80) and that I
>>         specify that I want to use the genome version GRch37, which
>>         data release is used? Ensembl 75? I meant between releases,
>>         there are some definition of genes that changes (namely some
>>         coordinates of genes, or ENSG identifiers (new, update,
>>         delete)...).
>>
>>         Best regards,
>>         Kirsley
>>
>>         _______________________________________________
>>         Dev mailing list Dev at ensembl.org <mailto:Dev at ensembl.org>
>>         Posting guidelines and subscribe/unsubscribe info:
>>         http://lists.ensembl.org/mailman/listinfo/dev
>>         Ensembl Blog: http://www.ensembl.info/
>>
>>
>>
>>
>>     _______________________________________________
>>     Dev mailing listDev at ensembl.org  <mailto:Dev at ensembl.org>
>>     Posting guidelines and subscribe/unsubscribe info:http://lists.ensembl.org/mailman/listinfo/dev
>>     Ensembl Blog:http://www.ensembl.info/
>
>
>     _______________________________________________
>     Dev mailing list Dev at ensembl.org <mailto:Dev at ensembl.org>
>     Posting guidelines and subscribe/unsubscribe info:
>     http://lists.ensembl.org/mailman/listinfo/dev
>     Ensembl Blog: http://www.ensembl.info/
>
>
>
>
> _______________________________________________
> Dev mailing list    Dev at ensembl.org
> Posting guidelines and subscribe/unsubscribe info: http://lists.ensembl.org/mailman/listinfo/dev
> Ensembl Blog: http://www.ensembl.info/

-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://mail.ensembl.org/pipermail/dev_ensembl.org/attachments/20150603/d816a13f/attachment.html>