[ensembl-dev] Which ensembl's data version is used for GRch37 annotation with VEP v80?

[Will McLaren]

You can access the homo_sapiens_*_80_37 databases on port 3337 of our
public database server e.g.:

mysql -hensembldb.ensembl.org -P3337 -uanonymous

Will

On 3 June 2015 at 09:37, Kirsley CHENNEN <kchennen at unistra.fr> wrote:

>  Hi Will,
>             Thanks for the quick answer! So if I want to match the VEP
> (v80) results on Ensembl's data (ex: retrieving annotations or xrefs
> ...etc), I should download the data from
> ftp://ftp.ensembl.org/pub/grch37/release-80/ right as there aren't any
> public mysql server up with 'homo_sapiens_core_80_37' on
> http://grch37.ensembl.org/info/data/mysql.html right?
>
> Best,
> Kirsley
>
>
> On 03/06/2015 10:22, Will McLaren wrote:
>
> Hi Kirsley,
>
>  The gene set is from Ensembl 75, but variation and regulation data have
> been updated.
>
>  See http://grch37.ensembl.org/index.html for more information.
>
>  Regards
>
>  Will McLaren
> Ensembl Variation
>
> On 3 June 2015 at 09:17, Kirsley CHENNEN <kchennen at unistra.fr> wrote:
>
>> Hi,
>>     If I use the latest version of VEP (v80) and that I specify that I
>> want to use the genome version GRch37, which data release is used? Ensembl
>> 75? I meant between releases, there are some definition of genes that
>> changes (namely some coordinates of genes, or ENSG identifiers (new,
>> update, delete)...).
>>
>> Best regards,
>> Kirsley
>>
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>
>
>
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