[ensembl-dev] Which ensembl's data version is used for GRch37 annotation with VEP v80?
Kirsley CHENNEN
kchennen at unistra.fr
Wed Jun 3 09:37:34 BST 2015
Hi Will,
Thanks for the quick answer! So if I want to match the VEP
(v80) results on Ensembl's data (ex: retrieving annotations or xrefs
...etc), I should download the data from
ftp://ftp.ensembl.org/pub/grch37/release-80/ right as there aren't any
public mysql server up with 'homo_sapiens_core_80_37' on
http://grch37.ensembl.org/info/data/mysql.html right?
Best,
Kirsley
On 03/06/2015 10:22, Will McLaren wrote:
> Hi Kirsley,
>
> The gene set is from Ensembl 75, but variation and regulation data
> have been updated.
>
> See http://grch37.ensembl.org/index.html for more information.
>
> Regards
>
> Will McLaren
> Ensembl Variation
>
> On 3 June 2015 at 09:17, Kirsley CHENNEN <kchennen at unistra.fr
> <mailto:kchennen at unistra.fr>> wrote:
>
> Hi,
> If I use the latest version of VEP (v80) and that I specify
> that I want to use the genome version GRch37, which data release
> is used? Ensembl 75? I meant between releases, there are some
> definition of genes that changes (namely some coordinates of
> genes, or ENSG identifiers (new, update, delete)...).
>
> Best regards,
> Kirsley
>
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