[ensembl-dev] List of Ensembl species codes

mag mr6 at ebi.ac.uk
Wed Jan 14 16:35:28 GMT 2015


Hi Greg,

The list of all three-letter species code can be found here:
http://www.ensembl.org/info/genome/stable_ids/index.html

This information is also stored in the database for each species, for 
the meta_key species.stable_id_prefix


Hope that helps,
Magali

On 14/01/2015 15:54, Greg Slodkowicz wrote:
> Hi all,
> I was wondering what's the best way to get a comprehensive list of the 
> three-letter species codes, as they appear in various identifiers, 
> such as 'ENSMUSG...' etc., ideally also with a mapping to numerical 
> taxids?
>
> I found the list at http://www.ensembl.org/info/about/species.html and 
> I can see that there is an option to export the table to CSV but the 
> three letter codes are not there.
>
>
> Best,
> Greg
>
>
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