[ensembl-dev] Established RefSeq annotation missing

Fergal fergal at ebi.ac.uk
Fri Apr 10 21:10:25 BST 2015

Hi Luke,

These are currently both in the otherfeatures database due for release for e80. We are doing the QC of the import at the moment and assuming all is okay with it they should both be present in e80 (under the RefSeq GFF3 annotation import track). I will let you know if the situation changes.

All the best,


On 10 Apr 2015, at 10:16, Luke Goodsell <Luke.Goodsell at ogt.com> wrote:

> Hi munificent EnsEMBL developers,
> I have found that both RefSeq transcripts for SERPINA2P (NM_006220 and NR_110563) are not listed in EnsEMBL despite being present in RefSeq since before February 2014, and available in other databases.
> Looking through the EnsEMBL mailing list archives, a similar issue was encountered before (http://lists.ensembl.org/pipermail/dev/2014-February/009822.html). Perhaps you could contact the NCBI folks to address the missing data in the files that they are providing?
> Is this the reason why these transcripts are not present, or is there something else I have overlooked?
> Kind regards,
> Luke
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