[ensembl-dev] Gene ID <-> Gene Ontology mapping with REST or BioMart API
Joel Fillon, Mr
joel.fillon at mcgill.ca
Tue Nov 18 15:58:36 GMT 2014
Perfect, let me know if you have another filter.
I'll use go_accession for now.
Thanks a lot Dan and Thomas!
De : dev-bounces at ensembl.org [dev-bounces at ensembl.org] de la part de Dan Staines [dstaines at ebi.ac.uk]
Envoyé : mardi 18 novembre 2014 10:47
À : dev at ensembl.org
Objet : Re: [ensembl-dev] Gene ID <-> Gene Ontology mapping with REST or BioMart API
On 11/18/2014 03:33 PM, Joel Fillon, Mr wrote:
> Another question:
> In BioMart, are goslim_goa_accession and goslim_goa_description available for EnsemblGenomes species
> or only for Ensembl species?
> I can't find them for athaliana_eg_gene dataset
We in Ensembl Genomes recently made some changes to how GO slims are
stored for our genomes. However, this means that the mart
filters/attributes you mention are no longer available. I'll investigate
the best way to provide this kind of filter.
Dan Staines, PhD Ensembl Genomes Technical Coordinator
EMBL-EBI Tel: +44-(0)1223-492507
Wellcome Trust Genome Campus Fax: +44-(0)1223-494468
Cambridge CB10 1SD, UK http://www.ensemblgenomes.org/
Dev mailing list Dev at ensembl.org
Posting guidelines and subscribe/unsubscribe info: http://lists.ensembl.org/mailman/listinfo/dev
Ensembl Blog: http://www.ensembl.info/
More information about the Dev