[ensembl-dev] Gene ID <-> Gene Ontology mapping with REST or BioMart API

Joel Fillon, Mr joel.fillon at mcgill.ca
Tue Nov 18 15:58:36 GMT 2014

Perfect, let me know if you have another filter.
I'll use go_accession for now.

Thanks a lot Dan and Thomas!

De : dev-bounces at ensembl.org [dev-bounces at ensembl.org] de la part de Dan Staines [dstaines at ebi.ac.uk]
Envoyé : mardi 18 novembre 2014 10:47
À : dev at ensembl.org
Objet : Re: [ensembl-dev] Gene ID <-> Gene Ontology mapping with REST or BioMart API

On 11/18/2014 03:33 PM, Joel Fillon, Mr wrote:
> Another question:
> In BioMart, are goslim_goa_accession and goslim_goa_description available for EnsemblGenomes species
> or only for Ensembl species?
> I can't find them for athaliana_eg_gene dataset

We in Ensembl Genomes recently made some changes to how GO slims are
stored for our genomes. However, this means that the mart
filters/attributes you mention are no longer available. I'll investigate
the best way to provide this kind of filter.



Dan Staines, PhD               Ensembl Genomes Technical Coordinator
EMBL-EBI                       Tel: +44-(0)1223-492507
Wellcome Trust Genome Campus   Fax: +44-(0)1223-494468
Cambridge CB10 1SD, UK         http://www.ensemblgenomes.org/

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