[ensembl-dev] Gene ID <-> Gene Ontology mapping with REST or BioMart API
Dan Staines
dstaines at ebi.ac.uk
Tue Nov 18 15:47:59 GMT 2014
On 11/18/2014 03:33 PM, Joel Fillon, Mr wrote:
> Another question:
> In BioMart, are goslim_goa_accession and goslim_goa_description available for EnsemblGenomes species
> or only for Ensembl species?
> I can't find them for athaliana_eg_gene dataset
We in Ensembl Genomes recently made some changes to how GO slims are
stored for our genomes. However, this means that the mart
filters/attributes you mention are no longer available. I'll investigate
the best way to provide this kind of filter.
Thanks,
Dan.
--
Dan Staines, PhD Ensembl Genomes Technical Coordinator
EMBL-EBI Tel: +44-(0)1223-492507
Wellcome Trust Genome Campus Fax: +44-(0)1223-494468
Cambridge CB10 1SD, UK http://www.ensemblgenomes.org/
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