[ensembl-dev] Gene ID <-> Gene Ontology mapping with REST or BioMart API

Dan Staines dstaines at ebi.ac.uk
Tue Nov 18 15:47:59 GMT 2014

On 11/18/2014 03:33 PM, Joel Fillon, Mr wrote:
> Another question:
> In BioMart, are goslim_goa_accession and goslim_goa_description available for EnsemblGenomes species
> or only for Ensembl species?
> I can't find them for athaliana_eg_gene dataset

We in Ensembl Genomes recently made some changes to how GO slims are 
stored for our genomes. However, this means that the mart 
filters/attributes you mention are no longer available. I'll investigate 
the best way to provide this kind of filter.



Dan Staines, PhD               Ensembl Genomes Technical Coordinator
EMBL-EBI                       Tel: +44-(0)1223-492507
Wellcome Trust Genome Campus   Fax: +44-(0)1223-494468
Cambridge CB10 1SD, UK         http://www.ensemblgenomes.org/

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