[ensembl-dev] Gene ID <-> Gene Ontology mapping with REST or BioMart API

Dan Staines dstaines at ebi.ac.uk
Tue Nov 18 17:24:46 GMT 2014


On 2014-11-18 15:58, Joel Fillon, Mr wrote:
> Perfect, let me know if you have another filter.
> I'll use go_accession for now.

Actually, GO accession should work fine as a filter as it includes 
genes annotated with child terms of your filter term. There isn't 
currently a specific attribute for the slim to which a GO term belongs, 
but we're looking at how to add this.

-- 
Dan Staines, PhD               Ensembl Genomes Technical Coordinator
EMBL-EBI                       Tel: +44-(0)1223-492507
Wellcome Trust Genome Campus   Fax: +44-(0)1223-494468
Cambridge CB10 1SD, UK         http://www.ensemblgenomes.org/




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