[ensembl-dev] Gene ID <-> Gene Ontology mapping with REST or BioMart API

Joel Fillon, Mr joel.fillon at mcgill.ca
Tue Nov 18 20:02:22 GMT 2014

OK thanks ; yes, I was ideally looking for an attribute to filter the slim subset only,
but go_accession is enough for now.

De : dev-bounces at ensembl.org [dev-bounces at ensembl.org] de la part de Dan Staines [dstaines at ebi.ac.uk]
Envoyé : mardi 18 novembre 2014 12:24
À : dev at ensembl.org
Objet : Re: [ensembl-dev] Gene ID <-> Gene Ontology mapping with REST or BioMart API

On 2014-11-18 15:58, Joel Fillon, Mr wrote:
> Perfect, let me know if you have another filter.
> I'll use go_accession for now.

Actually, GO accession should work fine as a filter as it includes
genes annotated with child terms of your filter term. There isn't
currently a specific attribute for the slim to which a GO term belongs,
but we're looking at how to add this.

Dan Staines, PhD               Ensembl Genomes Technical Coordinator
EMBL-EBI                       Tel: +44-(0)1223-492507
Wellcome Trust Genome Campus   Fax: +44-(0)1223-494468
Cambridge CB10 1SD, UK         http://www.ensemblgenomes.org/

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