[ensembl-dev] Triticum aestivum invalid GFF3

[Arnaud Kerhornou]

Hello Hans,

We hope to release Ensembl Genomes next week.

You're right about the source not being set consistently. This will be 
fixed for the Ensembl 76. Unfortunately, it is too late for being fixed 
for the coming Ensembl Genomes release.

Best regards,
Arnaud

On 19/03/2014 18:13, Hans Vasquez-Gross wrote:
> Hi All,
>
>    Following up on this to see email since it is mid march now.  Is 
> there an ETA for the updated annotation?  I recently downloaded 
> genometools and ran the current version of the gff3 through the 
> gff3validator.  However, it dies towards the beginning of the file 
> when it first encounters a protein_coding_gen/transcript/CDS/exon 
> definition block.
>
> hans$ gt gff3validator Triticum_aestivum.IWGSP1.21.gff3
> gt gff3validator: error: the multi-feature with ID 
> "Traes_3AS_775C097A2.1" on line 136 in file 
> "Triticum_aestivum.IWGSP1.21.gff3" has a different source than its 
> counterpart on line 135
>
> Cheers,
> -Hans
>
>
>
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