[ensembl-dev] Triticum aestivum invalid GFF3
Hans Vasquez-Gross
havasquezgross at ucdavis.edu
Wed Mar 19 18:13:52 GMT 2014
Hi All,
Following up on this to see email since it is mid march now. Is there
an ETA for the updated annotation? I recently downloaded genometools and
ran the current version of the gff3 through the gff3validator. However, it
dies towards the beginning of the file when it first encounters a
protein_coding_gen/transcript/CDS/exon definition block.
hans$ gt gff3validator Triticum_aestivum.IWGSP1.21.gff3
gt gff3validator: error: the multi-feature with ID "Traes_3AS_775C097A2.1"
on line 136 in file "Triticum_aestivum.IWGSP1.21.gff3" has a different
source than its counterpart on line 135
Cheers,
-Hans
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