[ensembl-dev] Ensembl 75 MySQL problem

Guillermo Marco Puche guillermo.marco at sistemasgenomicos.com
Fri Jul 18 12:26:21 BST 2014


Could anyone confirm me that files I mentioned are working properly on 
local MySQL server?
I've been messing around with MySQL server config settings, have no 
problem with releases from 61 to 74 with installation. But 75 isn't working.

I'm very skeptical about server fault. I some mysql files inside 
homo_sapiens_variation could be different than previous versions. I 
would like to know if the mysql instructions to install DB have changed 
from 74 to 75. If any of Ensembl admins could confirm me this it would 
be great.

Thank you.

Best regards,

On 07/17/2014 03:06 PM, Guillermo Marco Puche wrote:
> Dear developers,
> Since two weeks I'm trying to install the ensembl 75 release on local 
> MySQL server. (I've done this before since release 61 until release 74).
> I always install the following schemes:
>   * ensembl_compara
>   * ensembl_ontology
>   * homo_sapiens_core
>   * homo_sapiens_funcgen
>   * homo_sapiens_otherfeatures
>   * homo_sapiens_variation
> I'm experiencing a problem I've never encountered in the past. I'm 
> getting installation problem on *homo_sapiens_variation*.
> I've downloaded the sql *.tar.gz 4 times in the last two weeks. And 
> I'm experiencing the mysql error install. With version 74 and older 
> I've no problem.
> Could you guys check if that file is corrupted on public mysql ftp 
> server? Is the only logical explanation that comes to my mind.
> Thank you.
> Best regards,
> Guillermo.
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