[ensembl-dev] missing transcripts

[mag]

Hi Daniel,

The two RefSeq entries you are referring to have been last updated early 
February 2014 and mention a paper from late January 2014.
Could it be that these entries have only been recently created, hence 
would not have made it in our database at the time of update?

The RefSeq track displayed in Ensembl 75 was updated end of last year, 
so any more recent RefSeq entries would not be included here.


Regards,
Magali

On 27/02/2014 19:15, Caffrey, Daniel wrote:
> Hi,
>
> Does anyone know why the following refseq sequences/alignments do not 
> appear in version 75 (or other versions) of the cDNAs (Refseq/ENA) 
> track on the location tabs
>
> REFSEQ: NR_110420
> mouse 1:150159043-150164948
>
>
> REFSEQ: NR_110375
> human: 12:125509989-125511939
>
> There appear to be similar issues with other transcripts - They are 
> all lincRNAs and perhaps this is the reason?
>
>  Related to this, I know there are at least  3 splice 
> variants/transcripts for the mouse gene in genbank (JX682706, 
> JX682707, and JX682708) but Ensembl/gencode only lists a 
> single transcript ENSMUST00000181308. Presumably cDNA data is 
> sufficient evidence for inclusion within gencode?
>
> Thanks
>
> Daniel
>
>
>
>
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