[ensembl-dev] missing transcripts

[Caffrey, Daniel]

Hi,

Does anyone know why the following refseq sequences/alignments do not appear in version 75 (or other versions) of the cDNAs (Refseq/ENA) track on the location tabs

REFSEQ: NR_110420
mouse 1:150159043-150164948



REFSEQ: NR_110375
human: 12:125509989-125511939

There appear to be similar issues with other transcripts - They are all lincRNAs and perhaps this is the reason?

 Related to this, I know there are at least  3 splice variants/transcripts for the mouse gene in genbank (JX682706, JX682707, and JX682708) but Ensembl/gencode only lists a single transcript ENSMUST00000181308. Presumably cDNA data is sufficient evidence for inclusion within gencode?

Thanks

Daniel


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