[ensembl-dev] problem git installation bioperl

Ed Gray gray_ed at hotmail.com
Thu Dec 18 13:46:45 GMT 2014

We're you using Ubuntu 14?

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<div>-------- Original message --------</div><div>From: Julien Roux <julien.roux at unil.ch> </div><div>Date:12/18/2014  7:07 AM  (GMT-05:00) </div><div>To: Ensembl developers list <dev at ensembl.org> </div><div>Subject: [ensembl-dev] problem git installation bioperl </div><div>
Dear list,

I wanted to let you know that the installation of bioperl from Git (git
clone https://github.com/bioperl/bioperl-live.git) seems to be missing
some files, which leads to an error message when using the Ensembl API
For example folder bioperl-live/Bio/Root/ does not include Root.pm, it
includes only a script HTTPget.pm

Installing from the archive at
http://bioperl.org/DIST/BioPerl-1.6.1.tar.gz solved the problem since
all files are included now.


Julien Roux
Marie-Curie postdoctoral fellow
Department of Ecology and Evolution, University of Lausanne, Switzerland
Tel: +41 78 700 2931

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