[ensembl-dev] problem git installation bioperl

[Anne Lyle]

Hi Steve

Thanks for pointing out that git requires you to checkout a specific version - we’ll update the documentation accordingly.

Cheers

Anne


On 18 Dec 2014, at 12:43, Steve Moss <gawbul at gmail.com> wrote:

> Dear Julien,
> 
> If you do the following, it should work (I notice this isn't in the docs at http://www.ensembl.org/info/docs/api/api_git.html):
> 
> git clone https://github.com/bioperl/bioperl-live.git
> cd bioperl-live
> git checkout bioperl-release-1-6-1
> Cheers,
> 
> Steve
> 
> On 18 December 2014 at 12:07, Julien Roux <julien.roux at unil.ch> wrote:
> Dear list,
> 
> I wanted to let you know that the installation of bioperl from Git (git clone https://github.com/bioperl/bioperl-live.git) seems to be missing some files, which leads to an error message when using the Ensembl API
> For example folder bioperl-live/Bio/Root/ does not include Root.pm, it includes only a script HTTPget.pm
> 
> Installing from the archive at http://bioperl.org/DIST/BioPerl-1.6.1.tar.gz solved the problem since all files are included now.
> 
> Regards,
> Julien
> 
> -- 
> Julien Roux
> Marie-Curie postdoctoral fellow
> Department of Ecology and Evolution, University of Lausanne, Switzerland
> http://www.unil.ch/dee/home/menuinst/people/post-docs--associates/dr-julien-roux.html
> Tel: +41 78 700 2931
> 
> 
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> -- 
>  
> Steve Moss
> about.me/gawbul
> 
>  
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