[ensembl-dev] GRCH37 coordinates for PAR1, PAR2 and non PAR regions of chromosome X

[Andy Yates]

Hi,

The APIs will always use their release version databases by default. So yes the release/75 API will automatically connect to 75 databases.

Andy

------------
Andrew Yates - Ensembl Support Coordinator
European Molecular Biology Laboratory
European Bioinformatics Institute
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On 28 Aug 2014, at 11:26, Manuel Tardáguila Sancho <manueltar at hotmail.com> wrote:

> Hello,
> 
> Just a short question, I am using API from release 75 (downloaded from github branch release 75). 
> 
> Does the API automatically use online the genome version of release 75 or do I have to tell it somewhere in the script?
> 
> Best,
> 
> Date: Wed, 27 Aug 2014 12:02:14 +0100
> From: emily at ebi.ac.uk
> To: dev at ensembl.org
> Subject: Re: [ensembl-dev] GRCH37 coordinates for PAR1, PAR2 and non PAR regions of chromosome X
> 
> Hi G
> 
> You can get the coordinates of the PARs wrt X by clicking on them in the Y, and wrt Y by clicking on them in the X. They're the dark blue highlighting in these chromosome views:
> http://grch37.ensembl.org/Homo_sapiens/Location/Chromosome?r=X:98078104-98178104
> http://grch37.ensembl.org/Homo_sapiens/Location/Chromosome?r=Y:22570922-22670922
> 
> All the best
> 
> Emily
> 
> On 26/08/2014 18:02, Genomeo Dev wrote:
> Hi,
> 
> I have a set of genotyped variants on chromosome X which I would like to impute. To be able to specify the corresponding reference imputation pannel  (PAR1, PAR2 or nonPAR), I need to know in which of these corresponding regions my variants are located. 
> 
> Could you please provide me with the GRCH37 coordinates in the x-chromosome delineating PAR1, PAR2 and non PAR?
> 
> Thanks!
> 
> Best regards.
> -- 
> G.
> 
> 
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> Dr Emily Pritchard
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> 
> European Bioinformatics Institute (EMBL-EBI)
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