[ensembl-dev] GRCH37 coordinates for PAR1, PAR2 and non PAR regions of chromosome X

[Manuel Tardáguila Sancho]

Hello,
Just a short question, I am using API from release 75 (downloaded from github branch release 75). 
Does the API automatically use online the genome version of release 75 or do I have to tell it somewhere in the script?
Best,

Date: Wed, 27 Aug 2014 12:02:14 +0100
From: emily at ebi.ac.uk
To: dev at ensembl.org
Subject: Re: [ensembl-dev] GRCH37 coordinates for PAR1, PAR2 and non PAR regions of chromosome X


  
    
  
  
    Hi G

    

    You can get the coordinates of the PARs wrt X by clicking on them in
    the Y, and wrt Y by clicking on them in the X. They're the dark blue
    highlighting in these chromosome views:

http://grch37.ensembl.org/Homo_sapiens/Location/Chromosome?r=X:98078104-98178104

http://grch37.ensembl.org/Homo_sapiens/Location/Chromosome?r=Y:22570922-22670922

    

    All the best

    

    Emily

    

    On 26/08/2014 18:02, Genomeo Dev wrote:

    
    
      Hi,
        

        
        I have a set of genotyped variants on chromosome X which I
          would like to impute. To be able to specify the corresponding
          reference imputation pannel  (PAR1, PAR2 or nonPAR), I need to
          know in which of these corresponding regions my variants are
          located. 
        

        
        Could you please provide me with the GRCH37 coordinates in
          the x-chromosome delineating PAR1, PAR2 and non PAR?
        

        
        Thanks!
        

        
        Best regards.
        -- 

          G.
        
      
      

      
      

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    -- 
Dr Emily Pritchard
Ensembl Outreach Officer

European Bioinformatics Institute (EMBL-EBI)
European Molecular Biology Laboratory
Wellcome Trust Genome Campus
Hinxton
Cambridge
CB10 1SD
UK 
  


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