[ensembl-dev] GRCH37 coordinates for PAR1, PAR2 and non PAR regions of chromosome X

[Emily Pritchard]

Hi G

You can get the coordinates of the PARs wrt X by clicking on them in the 
Y, and wrt Y by clicking on them in the X. They're the dark blue 
highlighting in these chromosome views:
http://grch37.ensembl.org/Homo_sapiens/Location/Chromosome?r=X:98078104-98178104
http://grch37.ensembl.org/Homo_sapiens/Location/Chromosome?r=Y:22570922-22670922

All the best

Emily

On 26/08/2014 18:02, Genomeo Dev wrote:
> Hi,
>
> I have a set of genotyped variants on chromosome X which I would like 
> to impute. To be able to specify the corresponding reference 
> imputation pannel  (PAR1, PAR2 or nonPAR), I need to know in which of 
> these corresponding regions my variants are located.
>
> Could you please provide me with the GRCH37 coordinates in the 
> x-chromosome delineating PAR1, PAR2 and non PAR?
>
> Thanks!
>
> Best regards.
> -- 
> G.
>
>
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-- 
Dr Emily Pritchard
Ensembl Outreach Officer

European Bioinformatics Institute (EMBL-EBI)
European Molecular Biology Laboratory
Wellcome Trust Genome Campus
Hinxton
Cambridge
CB10 1SD
UK

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