[ensembl-dev] Draw Plugin in VEP

[Genomeo Dev]

Thanks for that.

On a related question, is there a standard way for running VEP plugins on
output already generated from VEP?

G.


On 9 April 2014 13:25, Will McLaren <wm2 at ebi.ac.uk> wrote:

> Hello,
>
> I'm afraid not, no.
>
> This plugin was intended as a proof of concept for others to develop on
> top of - I'm sure it could be easily improved to give the functionality you
> desire.
>
> You might be interested in pViz, which was announced a couple of weeks
> back:
>
> http://research-pub.gene.com/pviz/app/vep/
>
> This does a similar job but has a nice interactive interface.
>
> Regards
>
> Will McLaren
> Ensembl Variation
>
>
> On 9 April 2014 12:35, Genomeo Dev <genomeodev at gmail.com> wrote:
>
>> Hi,
>>
>> The Draw plugin in VEP is quite useful for producing a graphical
>> representation of where the variant is located related to a transcript.
>>
>> While it allows to select for a given manuscript or variant, the output
>> is not what you expect i.e. a single image showing for example all the
>> variants mapped onto the chosen manuscript. Rather, this option seems to be
>> just a filter of what variant-transcript pair images are produced.
>>
>> Is there a way to change this to get a single image?
>>
>> --
>> G.
>>
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>>
>
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>


-- 
G.
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